FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16624613
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1593358995.8433679027596No Hit
NTCGCTGA1731191.0413415337848766No Hit
TTCGCTGG549150.3303234788081984No Hit
GTCGCTGA400940.24117253135456448No Hit
TTCGCTGC380230.22871509851086458No Hit
TTGGCTGA366970.22073897299143144No Hit
TNCGCTGA360260.21670278881078314No Hit
TTCGGTGA348250.20947856049340816No Hit
TTCGCTAA317960.19125858749313443No Hit
TTCGCTGT251860.151498263448298No Hit
TTCGCGGA240900.1449056287806519No Hit
TTTGCTGA217690.13094440153283568No Hit
TGCGCTGA200430.12056220496681636No Hit
TTCGCTTA173860.10457987803986775No Hit
ATCGCTGA169280.10182492669152658No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)