FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21241277
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA2052619796.63353573328007No Hit
NATAGCGA1637770.7710317981353004No Hit
CATAGCGC450350.21201644326751165No Hit
CATAGCGG409860.19295450080520113No Hit
CGTAGCGA389700.18346354600055353No Hit
CATGGCGA370150.1742597679037847No Hit
CAGAGCGA355550.16738635817422842No Hit
GATAGCGA286270.1347706166630189No Hit
CATCGCGA279610.13163521195076927No Hit
CATAGCGT271590.12785954441439656No Hit
CCTAGCGA253180.11919245721431909No Hit
CATAGGGA248330.11690916699593909No Hit
CATAGCAA244690.11519552237843328No Hit
TATAGCGA239910.11294518686423607No Hit
AATAGCGA213820.10066249783381667No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)