FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20151833
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1941195296.32846798601398No Hit
NACATCCT2265721.1243245217444984No Hit
CACATCCA682590.3387235295171412No Hit
CACAGCCT518320.25720737165696045No Hit
CNCATCCT335760.16661511635194673No Hit
CCCATCCT333590.16553829123137334No Hit
CACATGCT283880.1408705600130767No Hit
CGCATCCT273230.1355856809651013No Hit
TACATCCT224720.11151342907615401No Hit
GACATCCT214460.10642208081021712No Hit
CACCTCCT202250.10036307863408754No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)