FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23425007
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2265255396.70243855209947No Hit
NGTCCAGA2665511.1378908019109664No Hit
GGTCGAGA444730.1898526647185207No Hit
GGGCCAGA427140.18234359545762355No Hit
GGTCCAGC389030.1660746568827066No Hit
GNTCCAGA388870.16600635380813333No Hit
TGTCCAGA298340.12735962042615398No Hit
GGTCCCGA298120.12726570369861576No Hit
GGCCCAGA275630.11766485277891273No Hit
GGTCCAGG264890.11308000889818304No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)