FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20034598
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1915097095.58948974169584No Hit
NACATCCT2068011.0322193637226962No Hit
CACATCCA729790.3642648582217622No Hit
CACAGCCT585120.2920547744456864No Hit
CACATCCG518310.2587074619615527No Hit
CNCATCCT430820.21503800575384643No Hit
CGCATCCT420710.20999173529710952No Hit
CCCATCCT414370.20682720961009549No Hit
GACATCCT386640.19298615325348678No Hit
CAGATCCT347560.1734798971259618No Hit
CACATGCT308420.1539436928058152No Hit
TACATCCT303900.15168759562832257No Hit
AACATCCT301910.15069431390637336No Hit
CACATCCC242310.12094577590226667No Hit
CACCTCCT217110.10836753500120143No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)