FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23215282
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2252195397.01348017224171No Hit
NGTCCAGA2318550.9987171381334071No Hit
GGGCCAGA411820.1773917715063724No Hit
GGTCCAGC378450.16301761916999327No Hit
TGTCCAGA350750.15108582355364022No Hit
GGTCCCGA327470.1410579462269724No Hit
GGCCCAGA273850.11796109131907163No Hit
GGTCCAGG266910.11497168115381928No Hit
GNTCCAGA252350.10869995031720917No Hit
GGTCGAGA235500.1014418002762146No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)