FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17160893
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA28500.080.5137941
TTACGCG10300.080.2338649
CGCCGAA28150.078.409521
ACGACCG26450.074.635981
GTGCGAC30100.074.297891
TTTGCGC27500.073.905391
GGCGACT32850.072.956691
GCGCTAG28750.070.4387361
GTACCGT37800.068.656458
CGAACGC32350.068.4547961
CGGTACG29550.068.285241
AACGCGT22400.066.678023
GCGCGTA29150.066.4733661
GACGCGT25300.066.2234651
TTACCCG36250.066.113851
GTTCGCG32500.064.908228
ATAACGC33100.064.702921
GCCGGAT36600.063.6903231
CGAACTA35500.063.201441
ACGCCGA33350.062.470471
Produced by FastQC (version 0.11.5)