FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17160893
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGACGC28450.0103.966995
CGACGCT28550.0103.095586
CACGACG30150.098.345294
GACGCTC39950.073.4950947
TACACGA43400.069.023892
CTACACG45000.066.514881
ACACGAC47050.063.7912033
ACGCTCT47950.061.2318888
CGCTCTT60050.049.739839
GTCCGAT9950.00356745427.3370981
TCTTCCG102000.06.65310-14
CTTCCGA122050.06.16597110-14
CGCTGAG32506.7429937E-95.84033061
CGTTAAG18952.9226032E-45.77869131
CGATGAG26559.861033E-75.77433821
TAACCCT605750.05.5053456
CTAACCC625200.05.4615955
CCTAACC643750.05.4506174
AACGGGG32151.9352228E-75.4497641
CGCAAAG26807.0904825E-65.44806961
Produced by FastQC (version 0.11.5)