FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22709732
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2196556296.72312293249432No Hit
NTGAGCCT2371911.044446495449616No Hit
TNGAGCCT484120.21317732855676147No Hit
GTGAGCCT426470.18779173615963413No Hit
TTGCGCCT365490.16093981205942898No Hit
TTGAGCCG344490.1516926751931727No Hit
TTGGGCCT333270.1467520620674872No Hit
TGGAGCCT310380.13667268288326784No Hit
TTTAGCCT282360.12433436026457732No Hit
TTGAGCCC261080.11496392824010429No Hit
TTGAGCCA244190.10752658816052958No Hit
TTGATCCT230080.10131339286610691No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)