FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22319858
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2152993796.46090490360648No Hit
NTGAGCCT2261501.0132232920119832No Hit
TTGAGGCT523300.23445489662165414No Hit
GTGAGCCT393520.17630936540904515No Hit
TTTAGCCT373630.16739801839241092No Hit
TTGCGCCT372880.16706199474924976No Hit
TTGAGCCG368440.16507273478173562No Hit
TTGGGCCT348620.1561927499717964No Hit
TGGAGCCT301590.13512182738796993No Hit
TTGAGCCC268080.12010829101152883No Hit
TTGATCCT245930.11018439275016893No Hit
TTGAGCCA245810.11013062896726314No Hit
TTGAGCGT233180.10447199081642902No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)