FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19579678
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1892714996.66731495788645No Hit
NACTTGAC1981861.0122025500112923No Hit
GACTTGAC351470.17950754859196355No Hit
CACTTGAC343270.17531953283399246No Hit
AACTTGCC321050.16397103159714882No Hit
AGCTTGAC298480.1524437735901479No Hit
AACTTGGC284010.14505345797821598No Hit
TACTTGAC278660.14232103306295435No Hit
AAGTTGAC233780.11939930779249791No Hit
AACTTTAC228690.11679967362078171No Hit
ACCTTGAC226810.1158394943982225No Hit
AACTGGAC204870.10463399857750469No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)