FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22216612
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2153399296.9274343000634No Hit
NTGAGCCT1681060.7566680284104524No Hit
TTGAGCCG572550.25771256211343113No Hit
TTGAGCCA389300.17522923837351978No Hit
GTGAGCCT381100.17153830656087435No Hit
TTGCGCCT373150.16795990315715106No Hit
TTTAGCCT369330.16624046906882112No Hit
TTGAGCCC349920.157503763400108No Hit
TTGGGCCT334310.15047748954701104No Hit
TGGAGCCT309740.13941819751814544No Hit
TTGAGGCT246220.11082697937921408No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)