FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16638686
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1608269296.6584260319595No Hit
NTCGCTGA1610440.9678889306523364No Hit
GTCGCTGA363330.2183645992237608No Hit
TTCGCTGC351620.21132678385781187No Hit
TTCGCTAA321280.1930921708601268No Hit
TTCGCTGG304250.18285698762510455No Hit
TTCGCGGA243300.146225489200289No Hit
TTGGCTGA240540.14456670436595773No Hit
TTTGCTGA205460.12348330871800814No Hit
TTCGCTGT204730.12304457214950748No Hit
TTCGCTTA169320.10176284353223565No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)