FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19269490
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1857457596.39370320646783No Hit
NGCAATTC2184301.133553612472359No Hit
AGCAGTTC511290.26533655016297786No Hit
AGCACTTC462450.23999078335752527No Hit
AGCAATTA395530.20526230844718774No Hit
ANCAATTC319910.1660189242164686No Hit
AGCAAGTC297780.15453444797968188No Hit
AGCAATGC272750.1415450019694346No Hit
AGCATTTC264500.13726362244148652No Hit
AGCAATTT207970.10792709096089205No Hit
CGCAATTC207960.10792190140994909No Hit
GGCAATTC201570.10460577835739295No Hit
AGCAATCC195210.10130522395766571No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)