FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20007619
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG11850.083.805119
TGCGCGA29600.080.59591
TTTGCGC31450.078.879861
CGCCGAA30650.076.402321
CGGTACG28500.073.435871
GTGCGAC35250.072.452491
GACGCGT30650.069.23961
ACGACCG28400.068.283321
TTACCCG39750.068.1163941
GCGCTAG37050.067.747451
TAGGCGC38200.067.4320451
GGCGACT42750.066.246341
CCGCTAT38300.065.34531
ATAACGC36550.065.270551
GCGCGTA35250.065.1864851
GTTACGC32100.063.681688
CGAACGC33400.063.5387341
GTACCGT42400.063.427638
TCACGCG29350.062.7329988
AACCGCG36750.062.5258141
Produced by FastQC (version 0.11.5)