FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17879934
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTGCGC28250.080.422751
TGCGCGA27150.080.183211
ACGACCG25800.076.733781
TTACGCG9750.075.841689
CGCCGAA28000.074.879151
GTGCGAC30450.074.132421
CGGTACG28000.071.487411
GCGCTAG30900.069.270161
GGCGACT35150.068.168781
CGTTGCG13900.067.2802057
GCGCGTA31350.066.411661
CGAACGC32350.066.391131
ACGCCGA34150.066.100511
TTACCCG36500.065.647481
GTACCGT39250.065.384688
ATAACGC32950.064.517071
CGAACTA37100.064.388881
CGAACGT18800.064.011473
TCGTACG35800.063.990648
CCGCTAT35500.063.792611
Produced by FastQC (version 0.11.5)