FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22296264
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2153652196.5925098482867No Hit
NTGAGCCT2165450.9712165230910434No Hit
GTGAGCCT531220.23825516238953756No Hit
TTGGGCCT466720.20932654905772555No Hit
TTGCGCCT401100.17989560941689603No Hit
TTGAGCCG361810.16227382309430852No Hit
TTTAGCCT332270.1490249666939717No Hit
TGGAGCCT306450.13744455124858587No Hit
TTGAGCCC273090.12248240332999286No Hit
ATGAGCCT256330.11496544892005225No Hit
TTGAGGCT245680.1101888639280554No Hit
TTGAGCCA240690.10795082081912916No Hit
TTGTGCCT230060.10318320593979333No Hit
TTGATCCT224760.10080612608462118No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)