FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21736017
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2097657196.50604800318293No Hit
NGTCGGAT1695530.7800555179911757No Hit
TGTCGGGT632320.29090886338559635No Hit
TGGCGGAT578900.26633214355693596No Hit
TGTCGGCT516530.23763783401531202No Hit
TGTCGGAG406770.1871410019600187No Hit
TGCCGGAT361940.16651624812402382No Hit
GGTCGGAT352490.16216862546620203No Hit
TGTCGGAA313550.14425365972063786No Hit
TGTGGGAT263150.12106633887892156No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)