FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21415162
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2069078996.61747597333142No Hit
NGTCGGAT2242251.0470385421319717No Hit
TGTCGGGT549260.2564818328247996No Hit
TGTCGGCT522190.2438412560222519No Hit
TNTCGGAT455040.2124849674263496No Hit
TGGCGGAT398520.18609245169380462No Hit
TGTCGGAG327520.15293837142114547No Hit
TGCCGGAT320990.14988912995381498No Hit
GGTCGGAT264610.1235619884640611No Hit
TGTCGGAA249540.11652491818646994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)