FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22362733
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT2165323196.82730192235448No Hit
NTGAGCCT2246421.0045373255585532No Hit
GTGAGCCT417390.18664534428774873No Hit
TTGCGCCT352240.15751205364746787No Hit
TTGAGCCG337310.15083576770334825No Hit
TTGGGCCT319180.14272852964796387No Hit
TTTAGCCT314540.14065364908662997No Hit
TGGAGCCT295060.1319427281093058No Hit
TTGAGCCC264910.11846047618598317No Hit
TTGAGGCT260160.11633640664582455No Hit
TNGAGCCT244910.10951702549057846No Hit
TTGAGCCA240930.10773727880219293No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)