FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23681683
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCCAGA2295591196.93530227560262No Hit
NGTCCAGA2457571.0377514131913683No Hit
GNTCCAGA497480.21006952926445302No Hit
GGTCCAGC381660.1611625322406351No Hit
GGGCCAGA372860.15744658012692764No Hit
TGTCCAGA326940.13805606636994508No Hit
GGTCCCGA320560.13536200108750718No Hit
GGTCCAGG287200.12127516443827072No Hit
GGCCCAGA265180.11197683880828908No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)