FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20600131
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1987032796.45728466484023No Hit
NATAGCGA2074001.0067897141042452No Hit
CATAGCGC416690.20227541271460847No Hit
CAGAGCGA415730.20180939626063543No Hit
CATAGGGA394380.1914453844977976No Hit
CATAGCGG344040.16700864669258658No Hit
CATAGCGT280620.1362224347019929No Hit
CATCGCGA259710.1260720138138927No Hit
CATAGCAA248930.12083903738282054No Hit
CCTAGCGA233480.11333908507669199No Hit
TATAGCGA231800.11252355628223919No Hit
CGTAGCGA229750.11152841697948425No Hit
CATGGCGA210620.10224206826645908No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)