FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20597111
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1975278095.90073093260506No Hit
NATAGCGA2139161.0385728367439493No Hit
CATAGCGG650950.3160394678651778No Hit
CATAGCGC480290.2331831876810296No Hit
CAGAGCGA465840.22616764069485282No Hit
CNTAGCGA446960.21700130663955736No Hit
GATAGCGA360090.17482548887560007No Hit
CGTAGCGA354170.1719512993836854No Hit
CATAGCGT352300.17104340506782723No Hit
TATAGCGA314080.1524874046656349No Hit
CCTAGCGA285200.13846602079291603No Hit
CATCGCGA278560.1352422677141469No Hit
AATAGCGA237700.11540453416015478No Hit
CATAGCAA236000.1145791756911928No Hit
CATGGCGA233080.11316150114450516No Hit
CATATCGA216890.10530117549009664No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)