FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19564791
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA29350.082.2982941
TTACGCG11400.082.02719
ACGACCG29300.078.941341
GTGCGAC32800.078.551381
CGCCGAA29900.077.602031
TTTGCGC30650.071.882141
CGGTACG28450.071.780581
CGAACGC33500.069.26271
GCGCTAG36000.068.519221
GACGCGT31350.066.3079761
TTACCCG40100.065.89431
ATAACGC37150.065.413031
CCTTACG35550.065.2686541
GTTCGCG40700.064.831848
GCGCGTA31600.064.39361
TCGTACG37500.064.178298
GGCGACT38700.062.4148561
TCGCGAT23850.062.308438
GTTACGC28500.062.0620778
AACGCGT26900.061.9904253
Produced by FastQC (version 0.11.5)