FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19098964
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1842038996.4470585943824No Hit
NGCAATTC1836600.961622839856654No Hit
AGCAATTA415420.21750918007908704No Hit
AGCACTTC410440.21490170880472886No Hit
AGCAGTTC349050.18275860407925792No Hit
GGCAATTC301820.1580295140616004No Hit
AGCAAGTC300810.15750068956619845No Hit
CGCAATTC260370.1363267662057481No Hit
AGCAATGC245370.1284729370661152No Hit
AGCAATTT240830.12609584477985297No Hit
AGCGATTC232120.1215353879927728No Hit
AGCATTTC231690.12131024489076998No Hit
AGGAATTC224540.11756658633421163No Hit
AGCCATTC215300.11272862758419777No Hit
AGCAATCC191580.10030910577139157No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)