FastQCFastQC Report
Wed 8 May 2024
EGAF00005486712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20024728
Total Bases160.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1926883896.22521714152622No Hit
NACATCCT2016251.0068800934524553No Hit
CACATCCA676850.3380070880363518No Hit
CACATGCT554530.2769226128814334No Hit
CACAGCCT410460.2049765669725951No Hit
CCCATCCT355910.1777352481392007No Hit
CGCATCCT288690.14416675222754585No Hit
CAGATCCT239490.11959713010833406No Hit
TACATCCT233710.11671069889189008No Hit
CACATCCG229420.11456834769491002No Hit
CACATTCT224900.11231113850834828No Hit
GACATCCT222320.11102273149477986No Hit
CACCTCCT205770.10275795007053279No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)