FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21107846
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2040578596.67393347478468No Hit
NGTCGGAT2130301.0092455667906615No Hit
TGTCGGCT543730.25759615642448785No Hit
TGTCGGGT536910.2543651303880083No Hit
TGGCGGAT448740.21259393308061844No Hit
TGCCGGAT354680.16803230419626902No Hit
TGTCGGAG320720.1519435000615411No Hit
GGTCGGAT255180.12089343460246961No Hit
TGTCGGAA250010.11844410841352548No Hit
TNTCGGAT230730.10931006413444555No Hit
TGTCGGTT213560.10117564814524418No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)