FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21060179
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2030574496.41771800705018No Hit
NGTCGGAT2054840.9756992093941841No Hit
TGTCGGCT550250.26127508222983287No Hit
TGTCGGGT541400.25707283874462794No Hit
TGGCGGAT522570.24813179413147438No Hit
TGCCGGAT366910.1742197917691013No Hit
TGTCGGAG361140.17148002398270212No Hit
GGTCGGAT358260.17011251423836427No Hit
TGTCGGAA253060.12016042218824445No Hit
TGTGGGAT234860.11151852033166479No Hit
TGTCGGTT230270.1093390516766263No Hit
TGTTGGAT228700.10859356893405323No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)