FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21249866
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT2049805796.46205298424No Hit
NGTCGGAT2427621.1424166157094826No Hit
TGTCGGGT567060.2668534474523275No Hit
TGTCGGCT506080.23815679590638358No Hit
TGGCGGAT455790.2144907643182315No Hit
TNTCGGAT351980.16563869155692557No Hit
TGCCGGAT349760.1645939790867387No Hit
TGTCGGAG296880.13970911628336857No Hit
GGTCGGAT244820.11521013826628365No Hit
TGTCGGAA238660.11231129645711647No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)