FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19582824
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1878902795.9464630841803No Hit
NACTTGAC2042051.0427760572223903No Hit
GACTTGAC496190.2533802070630875No Hit
AACTTGAG484600.2474617552606304No Hit
AGCTTGAC429010.21907463397516108No Hit
ANCTTGAC428520.21882441470137298No Hit
AACTGGAC398620.20355593248450785No Hit
CACTTGAC398280.20338231094759368No Hit
TACTTGAC339820.17352961962993693No Hit
AAGTTGAC336140.17165042181863044No Hit
AACTTGCC324770.1658443133635884No Hit
ACCTTGAC275530.14069982960578106No Hit
AACTTGAA249630.1274739537055534No Hit
AACTTGGC232780.11886947459671802No Hit
AACTTGAT200260.10226308524245534No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)