FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19724502
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1906859796.67466889658355No Hit
NACTTGAC2258571.1450580602744749No Hit
CACTTGAC338240.1714821494606049No Hit
GACTTGAC336310.17050367101790453No Hit
ANCTTGAC329260.16692943629197837No Hit
AACTGGAC318570.16150978108344635No Hit
AACTTGCC293500.14879970100132314No Hit
AGCTTGAC286580.14529137414977575No Hit
TACTTGAC265530.13461936833690402No Hit
AACTTGGC246600.1250221678600555No Hit
ACCTTGAC212610.10778979362824977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)