FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16566982
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1608258697.07613613632223No Hit
NTCGCTGA1258310.7595288025302375No Hit
TTCGCTGG462040.2788920758168265No Hit
TTCGCTGC389090.2348587087255844No Hit
TTCGCTAA322030.19438060595466333No Hit
GTCGCTGA252520.15242365809294656No Hit
TTCGCGGA243880.14720846560948758No Hit
TTCGCTGT239350.1444741112171185No Hit
TTCGCTTA187250.11302601765366799No Hit
TTGGCTGA170300.10279482406632663No Hit
TTTGCTGA170190.10272842693980111No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)