FastQCFastQC Report
Thu 9 May 2024
EGAF00005486732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16634914
Total Bases133 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA1612360096.92626003356554No Hit
NTCGCTGA1669711.0037382820253835No Hit
TTCGCTAA317610.19092975172579793No Hit
TTCGCTGC315370.18958318630321744No Hit
GTCGCTGA275400.16555540954404693No Hit
TTCGCTGG269150.16179825155693622No Hit
TTCGCGGA266420.16015712494816625No Hit
TNCGCTGA184300.11079107472392104No Hit
TTCGCTGT182670.10981120792088256No Hit
TTCGCTTA178910.10755090167583674No Hit
TTGGCTGA168030.1010104410518744No Hit
TTTGCTGA166720.10022294073777599No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)