FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18939614
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1822399196.22155446251439No Hit
NGGATCTA2144191.1321191656809901No Hit
AGGAGCTA594090.31367587533726926No Hit
AGGGTCTA368670.19465549825883463No Hit
AGGATGTA318620.16822940530889383No Hit
ANGATCTA315250.16645006598339335No Hit
AGGCTCTA305310.16120180696396452No Hit
AGGATCTC286120.15106960469204916No Hit
CGGATCTA266780.14085820334036375No Hit
GGGATCTA258600.1365392135235702No Hit
AGGTTCTA238570.12596349640494256No Hit
AGGAACTA233620.12334992677253084No Hit
TGGATCTA202890.10712467529697278No Hit
AGGATCAA201190.10622708572624553No Hit
AGGACCTA200620.10592612922311934No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)