FastQCFastQC Report
Wed 8 May 2024
EGAF00005486736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20048244
Total Bases160.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1937255096.62965993430646No Hit
NACATCCT1983550.9893883973080136No Hit
CACATCCA688600.3434714781005259No Hit
CCCATCCT360410.17977135553617565No Hit
CACAGCCT335180.1671867122128003No Hit
CACATGCT317810.15852261175592236No Hit
CGCATCCT258900.12913849212928574No Hit
TACATCCT233500.1164690533495103No Hit
CNCATCCT219780.10962556122122216No Hit
GACATCCT210770.10513140203201837No Hit
CACATCCG210220.10485706379072403No Hit
AACATCCT200680.10009854229627294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)