FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20048244
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACGCG12000.090.013219
TGCGCGA31450.084.507261
CGCCGAA32150.078.806461
ACGACCG28650.077.475131
GTGCGAC34400.073.864231
CGGTACG32600.073.0152051
TTTGCGC32250.070.864381
ATAACGC36700.066.449811
CGAACGC36050.066.432691
GTTACGC31300.065.546058
GCGCGTA34350.065.4692461
CCGCTAT36700.065.25611
GACGCGT31800.065.208551
AACGCGT27650.064.7709053
GCGCTAG33150.064.3150561
TTACCCG39300.064.2831041
TCGCGAT21700.064.142528
GGCGACT38900.064.005621
CGAACTA40450.063.899591
CGCGGTA40450.062.8165441
Produced by FastQC (version 0.11.5)