FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17764083
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1714490996.51446123056282No Hit
NATGCTTA1729040.9733347902056075No Hit
CATGCTAA402360.22650198155457843No Hit
CATGCGTA333420.18769333604217003No Hit
CAGGCTTA320730.1805497080823142No Hit
GATGCTTA291260.16396005355300355No Hit
TATGCTTA280470.15788599951936724No Hit
CCTGCTTA240440.13535176569485743No Hit
CATGCTTC227570.12810680967883342No Hit
AATGCTTA223300.12570308301306632No Hit
CGTGCTTA209130.11772631325804997No Hit
CATGCTTG179690.1011535467381007No Hit
CACGCTTA179480.10103533067257117No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)