FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486742

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486742
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18247605
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTTA1760748196.49201086937163No Hit
NATGCTTA1418960.7776143773388343No Hit
CATGCTAA416840.22843545769431112No Hit
CATGCGTA411190.22533916094742298No Hit
CGTGCTTA364920.19998240865034067No Hit
CAGGCTTA364910.19997692847910725No Hit
GATGCTTA278110.15240904217293175No Hit
CCTGCTTA251820.13800167200024333No Hit
CATGCTTC244070.13375453929433478No Hit
CATGCTTG243260.13331064542442692No Hit
CATGGTTA233300.12785239487593028No Hit
TATGCTTA228480.12521095234141685No Hit
CATGCCTA208020.11399852199781835No Hit
AATGCTTA203470.11150504408660752No Hit
CACGCTTA195340.10704966487382864No Hit
CATGCTTT183390.10050086024987936No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)