FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486747

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486747
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17672472
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1497862884.75683537651099No Hit
NACATCCT6863333.8836275989007083No Hit
TACATCCT6771453.8316371359931987No Hit
AACATCCT6054173.4257629606090196No Hit
GACATCCT4562202.581529058300389No Hit
CACATCCA487230.2756999699872208No Hit
CACAGCCT303030.1714700693824837No Hit
CGCATCCT212750.12038496934667657No Hit
CACATCCG185190.10479009388160297No Hit
CACATGCT181570.10274171038437634No Hit
CCCATCCT179770.10172317715371115No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)