FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18116909
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTAGAG1449641680.01594532488959No Hit
TAGTAGAG9741085.37678916420014No Hit
NAGTAGAG7499224.1393484948232615No Hit
CAGTAGAG7374124.070296980572127No Hit
GAGTAGAG6327943.492836443567719No Hit
AAGGAGAG1061230.5857676935949725No Hit
AAGTACAG481730.26590076706793636No Hit
AAGTGGAG437180.24131047961879148No Hit
AAGTCGAG336480.18572704648458518No Hit
AAGAAGAG319290.17623867294360201No Hit
AAGCAGAG318360.17572534034365356No Hit
AAGTAAAG291880.16110916050856136No Hit
AGGTAGAG283060.1562407803671145No Hit
AAGTAGGG262290.14477635230159847No Hit
AAGTATAG222360.12273616873606862No Hit
AAGTTGAG218780.12076011421153575No Hit
AAGTAGCG209580.11568198526580886No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)