FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19145505
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCGGAT1527312279.77393127002918No Hit
GGTCGGAT12054326.296161945062301No Hit
AGTCGGAT8902144.649728487182761No Hit
NGTCGGAT7483283.9086354734440274No Hit
CGTCGGAT7198853.760073186891649No Hit
TGGCGGAT511030.26691904966727176No Hit
TGTCGGGT492600.25729276924270217No Hit
TGCCGGAT320260.16727686211463214No Hit
TGTCGGCT315410.1647436304239559No Hit
TGTCGGAG236600.12357992123999864No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)