FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21058403
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGAGCCT1778829284.47122984587197No Hit
GTGAGCCT11152715.296085367917025No Hit
NTGAGCCT8409273.9933085144205855No Hit
ATGAGCCT5053182.3996026669258823No Hit
CTGAGCCT4211722.000018709870829No Hit
TGGAGCCT422400.20058501112358804No Hit
TTGAGGCT362690.1722305342907532No Hit
TNGAGCCT317290.15067144455351147No Hit
TTGAGCCG280980.1334289214618981No Hit
TTGAGCCC247560.11755877214430742No Hit
TTGGGCCT239460.11371232661849999No Hit
TTTAGCCT213110.10119950691417577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)