FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18806590
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGCGA31050.078.512891
TTACGCG10950.078.1102459
TTTGCGC30500.077.296311
ACGACCG26850.075.027571
CGCCGAA30650.075.012941
CGGTACG28050.073.118881
GCGCTAG32300.070.277121
GTGCGAC30650.068.8213961
TTACCCG37150.066.210551
CGATTCG22950.064.7485054
TAGGCGC36000.064.067931
TCGCGAT20850.063.6199348
CGAACGC36800.062.8734861
TCGTACG37150.062.8268438
GCGCGTA31550.062.6940081
CTAACGA37800.062.3687171
GGCGACT40050.062.1452561
TCACGCG25450.061.8045048
CGTTGCG15600.061.3334667
CCGCTAT38450.061.3143731
Produced by FastQC (version 0.11.5)