FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005486773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17686035
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1536977286.90343539408353No Hit
NGCAATTC6939463.9236945985914873No Hit
TGCAATTC5427363.0687262577508188No Hit
CGCAATTC4274012.416601572935935No Hit
GGCAATTC3614222.0435445253840103No Hit
AGCAATTA325500.18404351229656618No Hit
AGCAATGC311110.17590714934127408No Hit
AGCAAGTC254140.14369529405545112No Hit
AGCAGTTC246380.13930765148887245No Hit
AGCACTTC222300.12569238950392217No Hit
AGCAATCC191610.10833971548738879No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)