FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17194687
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAATTC1387327980.68352160175989No Hit
TGCAATTC9194035.347017948044067No Hit
NGCAATTC7185284.178779177544785No Hit
CGCAATTC7133514.1486710400718545No Hit
GGCAATTC5948213.459330198915514No Hit
AGCAAGTC617330.3590236914460845No Hit
AGCAACTC549020.31929630356167576No Hit
AGCAATGC342360.1991080151677085No Hit
AGCAAATC308170.17922396610069144No Hit
AGCAATTA300340.17467023389259717No Hit
AGCAGTTC233470.13578031400048166No Hit
AGCACTTC204670.11903095415461765No Hit
AGCAATCC179190.10421242329098518No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)