FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19054404
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAGCGA1769272392.85372032628257No Hit
NATAGCGA6424103.3714515552415074No Hit
TATAGCGA1443790.7577198426148621No Hit
GATAGCGA1029950.5405312073786197No Hit
CATAGCGC409220.21476399891594616No Hit
CAGAGCGA363110.19056486888805338No Hit
CATAGCGG358370.1880772550009961No Hit
CGTAGCGA322290.16914199992820558No Hit
AATAGCGA291050.15274684004810646No Hit
CATAGCGT279990.1469424076449728No Hit
CATGGCGA271340.14240277470762142No Hit
CATAGGGA265240.13920141506394007No Hit
CATCGCGA220050.11548511304788121No Hit
CATAGCAA212400.11147029316687103No Hit
CATATCGA194090.10186096610526364No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)