FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16902115
Sequences flagged as poor quality0
Sequence length8
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1359349980.42484032323766No Hit
TGGATCTA9415065.57034430306503No Hit
NGGATCTA7063374.178985884310928No Hit
CGGATCTA6987334.133997431682366No Hit
GGGATCTA6096533.6069627972593965No Hit
AGGATGTA528140.3124697707949567No Hit
AGGAGCTA452750.26786588542321477No Hit
AGGGTCTA315530.18668077929892204No Hit
AGGATATA302610.17903676551721484No Hit
AGGCTCTA196400.11619847575288654No Hit
AGGATTTA190890.11293852869892318No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)