FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16278009
Sequences flagged as poor quality0
Sequence length8
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGATCTA1251846476.90414718409359No Hit
TGGATCTA10978886.744608631190705No Hit
CGGATCTA9155395.624391779117458No Hit
GGGATCTA7035604.322150208910684No Hit
NGGATCTA6830554.19618271497454No Hit
AGGAGCTA496430.3049697294060963No Hit
AGGGTCTA334920.2057499783910919No Hit
AGGATGTA281620.17300641620237464No Hit
AGGCTCTA220360.13537282108641174No Hit
AGGATCTC213020.13086367012083602No Hit
AGGATCGA212400.13048278815916617No Hit
AGGTTCTA199380.12248426696409861No Hit
AGGATCAA189790.11659288307310801No Hit
AGGAACTA172210.10579303648253298No Hit
AGGACCTA165700.1017937758849992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)