FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18039155
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTTGAC1666834592.40091900091772No Hit
NACTTGAC6112413.3884125947141097No Hit
TACTTGAC1995161.1060163294788476No Hit
GACTTGAC1480800.8208810224203962No Hit
CACTTGAC498620.2764098429222433No Hit
AGCTTGAC381610.21154538557931346No Hit
AACTTGCC269110.1491810453427558No Hit
AACTTGGC268850.149036914423098No Hit
AACTGGAC250330.1387703581459331No Hit
AACTTTAC233870.129645762232211No Hit
AACTTGAA230300.1276667338353709No Hit
ACCTTGAC199130.11038765396716198No Hit
AACTCGAC193530.1072832956976089No Hit
AACTTGAG188750.10463350417466895No Hit
AAGTTGAC180760.10020425014364587No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)