FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005486790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005486790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18329263
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACATCCT1692925992.3619187525434No Hit
NACATCCT6159793.3606315758576875No Hit
TACATCCT1557350.8496522746168245No Hit
GACATCCT1117220.6095280535829509No Hit
CACATCCA621170.3388952409052126No Hit
CACAGCCT498740.27210041123857515No Hit
CGCATCCT362820.1979457657408266No Hit
CACATGCT360190.19651090172038013No Hit
AACATCCT340000.18549572887900623No Hit
CACATCCG329320.17966898068951273No Hit
CCCATCCT291570.1590734990272113No Hit
CACATCCC245350.13385699141312993No Hit
CACACCCT229460.12518779396640226No Hit
CACGTCCT225540.12304913732756194No Hit
CACCTCCT197810.10792032391045946No Hit
CACAACCT189630.10345751490389984No Hit
CACATTCT186360.10167348245262234No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)